hg19TSSdata

Transcription start site (TSS) data for the human genome (hg19).

Usage

hg19TSSdata

Format

A data frame with 43327 rows and 3 variables:

chr

Chromosome name (e.g., "chr1").

TargetGene

Gene name associated with the TSS.

TargetGeneTSS

Position of the TSS.

Source

UCSC RefGene database (https://hgdownload2.soe.ucsc.edu/goldenPath/hg19/bigZips/genes/hg19.refGene.gtf.gz).

Details

This dataset contains transcription start site annotations for the hg19 human genome assembly.

Examples

data(hg19TSSdata)
head(hg19TSSdata)
#>     chr   TargetGene TargetGeneTSS
#> 1  chr1 LOC102725121         11869
#> 2  chr1      DDX11L1         11874
#> 3 chr22      SPECC1L      24666799
#> 4  chr1    MIR6859-1         17436
#> 5  chr1    MIR6859-2         17436
#> 6  chr1    MIR6859-3         17436