mm9TSSdata

Transcription start site (TSS) data for the mouse genome (mm9).

Usage

mm9TSSdata

Format

A data frame with 31479 rows and 3 variables:

chr

Chromosome name (e.g., "chr1").

TargetGene

Gene name associated with the TSS.

TargetGeneTSS

Position of the TSS.

Source

UCSC RefGene database (https://hgdownload2.soe.ucsc.edu/goldenPath/mm9/bigZips/genes/mm9.refGene.gtf.gz).

Details

This dataset contains transcription start site annotations for the mm9 mouse genome assembly.

Examples

data(mm9TSSdata)
head(mm9TSSdata)
#>     chr TargetGene TargetGeneTSS
#> 1 chr15     Rbfox2      77137483
#> 2  chr2      Hipk3     104334646
#> 3  chr2     Pfkfb3      11423717
#> 4  chr2       Gpd2      57090089
#> 5  chr6       Emp1     135317511
#> 6 chr10     Arid3a      79389788